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Peposertib
M3814
DNA-PK (DNA-PKcs/PRKDC) inhibitor
Evidence Score
28
Peposertib (M3814; Merck KGaA/EMD Serono) is an oral, selective, ATP-competitive inhibitor of DNA-dependent protein kinase catalytic subunit (DNA-PKcs, PRKDC), inhibiting DNA-PKcs autophosphorylation at Thr2609 and blocking canonical non-homologous end-joining (NHEJ) of DNA double-strand breaks (DSBs). The SDH-specific rationale derives directly from the BRCAness phenotype established by Sulkowski et al. (Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005): SDH loss → succinate accumulation → competitive inhibition of α-KG-dependent KDM4A and KDM4B histone demethylases → H3K9me3 persistence at DSB chromatin → impaired TIP60 acetyltransferase and ATM kinase recruitment → defective homologous recombination (HR) repair in all SDH-deficient tumor cells. In cells with intact HR, DSBs are partitioned between HR (preferred in S/G2 phases) and canonical NHEJ. In HR-deficient BRCAness-positive cells, NHEJ becomes the dominant and often sole mechanism for DSB resolution. DNA-PKcs, together with the Ku70/Ku80 heterodimer, forms the DNA-PK holoenzyme at DSB ends. DNA-PKcs synapses DSB ends, phosphorylates H2AX (γ-H2AX mark), recruits and activates ARTEMIS nuclease for 5'/3' overhang processing, and enables ligation by the XRCC4-DNA ligase IV-XLF complex. Inhibiting DNA-PKcs with peposertib in BRCAness-positive SDH-deficient cells removes this compensatory NHEJ backup — HR is already constitutively impaired by the succinate-KDM4B-H3K9me3 mechanism — and DSBs accumulate lethally. HR-proficient SDH-intact cells retain the ability to repair DSBs via HR and are substantially less sensitive to DNA-PKcs inhibition, providing the therapeutic window. This direction is mechanistically distinct from all other BRCAness-targeted entries in this engine: PARP inhibitors (olaparib/niraparib, Mechanism 14) trap PARP1 at single-strand breaks that collapse to DSBs, and those DSBs cannot be repaired by impaired HR; POLQ inhibitor (ART558, Mechanism 18) blocks the alt-EJ/TMEJ backup pathway (not canonical NHEJ); CHK1 inhibitor (prexasertib, Mechanism 28) targets the replication stress checkpoint effector rather than a DSB repair pathway. Peposertib targeting canonical NHEJ adds a fourth orthogonal attack on the DSB repair failure that defines BRCAness-positive SDH-deficient tumors. A particularly compelling clinical rationale exists for the combination of peposertib with PRRT in SDH-deficient PPGL: (1) SDH-deficient PPGL are universally SSTR2-high (confirmed DOTATATE-PET; PMID 42454478), making them eligible for Lu-177 DOTATATE PRRT; (2) PRRT delivers targeted β/α-particle radiation directly to SSTR2+ cells, generating DSBs in the tumor; (3) BRCAness (Mechanism 14) impairs HR repair of those DSBs; (4) peposertib inhibits NHEJ repair of those same DSBs — creating triple DSB repair failure selectively in SSTR2-high, BRCAness-positive SDH-deficient cells. This mechanistic rationale is directly reflected in NCT04750954 (NCI Phase 1b; peposertib + Lu-177 DOTATATE in SSTR2+ GEP-NETs), which tests exactly this combination in a SSTR2+ neuroendocrine tumor population overlapping substantially with SDH-deficient PPGL. Key clinical data: NCT02516813 (Phase 1a/1b; M3814 + fractionated radiotherapy + cisplatin in advanced solid tumors; completed; n=52; Merck/EMD Serono) established peposertib safety and dosing in combination with radiation and a DNA-damaging agent — exactly the clinical scenario of interest. Zenke FT et al. (Mol Cancer Ther 2020, PMID 32265313) demonstrated that peposertib potentiates radiation-induced cytotoxicity and regresses human tumor xenografts as a single agent and in combination with radiation. Key limitations: (1) No published data test peposertib in any SDH-deficient cell line or xenograft model. (2) No SDH-genotype-stratified efficacy data exist from any peposertib trial. (3) The synthetic lethality of DNA-PK inhibition with the SDH-specific BRCAness phenotype is mechanistically motivated but requires direct experimental validation in isogenic SDHA-null/SDHB-KO cell lines. Evidence_score 28 (theoretical): well-anchored mechanistic chain from SDH loss through BRCAness to NHEJ dependency, with supporting peposertib clinical data in related contexts, but no SDH-specific experimental or clinical data.
Succinate accumulation competitively inhibits the α-KG-dependent histone demethylases KDM4A and KDM4B (JMJD2A/B), which normally erase repressive H3K9me3 marks at sites of DNA double-strand breaks. When KDM4B is inhibited, H3K9me3 hypermethylation persists at break sites, blocking recruitment of TIP60 acetyltransferase and ATM kinase — both required for DNA end-resection and initiation of homology-directed repair (HDR/HR). The result is a 'BRCAness' phenotype: SDH-deficient tumor cells have impaired HR capacity despite wild-type BRCA1/2. Sulkowski et al. (Nat Genet 2018, PMID: 30013182) directly demonstrated HR deficiency and olaparib hypersensitivity in cells and tumors from SDH-deficient hereditary paraganglioma/PPGL patients; Sulkowski et al. (Nature 2020, PMID: 32494005) dissected the KDM4B/H3K9me3 chromatin mechanism.
Upstream event:
SDH loss → succinate accumulation → competitive inhibition of KDM4A/KDM4B (α-KG-dependent H3K9me3 demethylases) → H3K9me3 persistence at DNA double-strand break sites → impaired TIP60/ATM recruitment → defective DNA end-resection → HR deficiency
Downstream effects:
In HR-deficient BRCAness-positive SDH-deficient cells, the non-homologous end-joining (NHEJ) pathway becomes the primary backup for DNA double-strand break (DSB) repair. DNA-PKcs (PRKDC), together with Ku70/Ku80, forms the DNA-PK holoenzyme at DSB ends — phosphorylating H2AX, activating ARTEMIS nuclease for end processing, and enabling XRCC4-DNA ligase IV ligation. Inhibiting DNA-PKcs in HR-deficient cells (BRCAness from SDH loss) removes this compensatory NHEJ backup, creating synthetic lethality. HR-proficient normal cells retain HR as an alternative DSB repair route and are substantially less affected.
Upstream event:
SDH loss → succinate → KDM4A/KDM4B inhibition → H3K9me3 persistence at DSBs → impaired TIP60/ATM → HR deficiency (BRCAness) → NHEJ becomes dominant/sole DSB repair pathway → dependency on DNA-PKcs for NHEJ execution
Downstream effects:
PRKDC
DNA-dependent protein kinase catalytic subunit (DNA-PKcs)
Serine/threonine kinase and catalytic subunit of the DNA-PK holoenzyme (DNA-PKcs + Ku70/Ku80 heterodimer). DNA-PKcs is recruited to DNA double-strand break (DSB) ends by the Ku70/Ku80 ring, synapses the DSB ends to initiate the NHEJ repair complex, and phosphorylates multiple substrates including H2AX (γ-H2AX chromatin mark), ARTEMIS nuclease (activating it for 5'/3' overhang processing), and itself (autophosphorylation at Thr2609/Ser2056 regulates complex disassembly). DNA-PKcs coordinates XRCC4-DNA ligase IV-XLF ligation of processed DSB ends to complete NHEJ. In BRCAness-positive HR-deficient SDH-deficient tumors (where succinate-driven KDM4A/KDM4B inhibition constitutively impairs HR: Sulkowski et al. Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005), DNA-PKcs-mediated NHEJ becomes the primary DSB repair mechanism. Inhibiting DNA-PKcs with peposertib (M3814) therefore creates synthetic lethality with the BRCAness phenotype — distinct from POLQ inhibition (targets alt-EJ/TMEJ backup) and CHK1 inhibition (targets replication checkpoint, not repair pathway itself).
UniProt: P78527
Tumor Type Applicability
Evidence from PubMed, OpenTargets, and ChEMBL will appear here once external data integration is enabled.
Coming in Phase 3
For research exploration only — not medical advice. Consult your doctor before acting on any information.
Have Claude analyze this drug's repurposing potential for SDH-deficient diseases.