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Peposertib

M3814

DNA-PK (DNA-PKcs/PRKDC) inhibitor

Evidence Score

28

theoretical
Mechanism of Action

Peposertib (M3814; Merck KGaA/EMD Serono) is an oral, selective, ATP-competitive inhibitor of DNA-dependent protein kinase catalytic subunit (DNA-PKcs, PRKDC), inhibiting DNA-PKcs autophosphorylation at Thr2609 and blocking canonical non-homologous end-joining (NHEJ) of DNA double-strand breaks (DSBs). The SDH-specific rationale derives directly from the BRCAness phenotype established by Sulkowski et al. (Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005): SDH loss → succinate accumulation → competitive inhibition of α-KG-dependent KDM4A and KDM4B histone demethylases → H3K9me3 persistence at DSB chromatin → impaired TIP60 acetyltransferase and ATM kinase recruitment → defective homologous recombination (HR) repair in all SDH-deficient tumor cells. In cells with intact HR, DSBs are partitioned between HR (preferred in S/G2 phases) and canonical NHEJ. In HR-deficient BRCAness-positive cells, NHEJ becomes the dominant and often sole mechanism for DSB resolution. DNA-PKcs, together with the Ku70/Ku80 heterodimer, forms the DNA-PK holoenzyme at DSB ends. DNA-PKcs synapses DSB ends, phosphorylates H2AX (γ-H2AX mark), recruits and activates ARTEMIS nuclease for 5'/3' overhang processing, and enables ligation by the XRCC4-DNA ligase IV-XLF complex. Inhibiting DNA-PKcs with peposertib in BRCAness-positive SDH-deficient cells removes this compensatory NHEJ backup — HR is already constitutively impaired by the succinate-KDM4B-H3K9me3 mechanism — and DSBs accumulate lethally. HR-proficient SDH-intact cells retain the ability to repair DSBs via HR and are substantially less sensitive to DNA-PKcs inhibition, providing the therapeutic window. This direction is mechanistically distinct from all other BRCAness-targeted entries in this engine: PARP inhibitors (olaparib/niraparib, Mechanism 14) trap PARP1 at single-strand breaks that collapse to DSBs, and those DSBs cannot be repaired by impaired HR; POLQ inhibitor (ART558, Mechanism 18) blocks the alt-EJ/TMEJ backup pathway (not canonical NHEJ); CHK1 inhibitor (prexasertib, Mechanism 28) targets the replication stress checkpoint effector rather than a DSB repair pathway. Peposertib targeting canonical NHEJ adds a fourth orthogonal attack on the DSB repair failure that defines BRCAness-positive SDH-deficient tumors. A particularly compelling clinical rationale exists for the combination of peposertib with PRRT in SDH-deficient PPGL: (1) SDH-deficient PPGL are universally SSTR2-high (confirmed DOTATATE-PET; PMID 42454478), making them eligible for Lu-177 DOTATATE PRRT; (2) PRRT delivers targeted β/α-particle radiation directly to SSTR2+ cells, generating DSBs in the tumor; (3) BRCAness (Mechanism 14) impairs HR repair of those DSBs; (4) peposertib inhibits NHEJ repair of those same DSBs — creating triple DSB repair failure selectively in SSTR2-high, BRCAness-positive SDH-deficient cells. This mechanistic rationale is directly reflected in NCT04750954 (NCI Phase 1b; peposertib + Lu-177 DOTATATE in SSTR2+ GEP-NETs), which tests exactly this combination in a SSTR2+ neuroendocrine tumor population overlapping substantially with SDH-deficient PPGL. Key clinical data: NCT02516813 (Phase 1a/1b; M3814 + fractionated radiotherapy + cisplatin in advanced solid tumors; completed; n=52; Merck/EMD Serono) established peposertib safety and dosing in combination with radiation and a DNA-damaging agent — exactly the clinical scenario of interest. Zenke FT et al. (Mol Cancer Ther 2020, PMID 32265313) demonstrated that peposertib potentiates radiation-induced cytotoxicity and regresses human tumor xenografts as a single agent and in combination with radiation. Key limitations: (1) No published data test peposertib in any SDH-deficient cell line or xenograft model. (2) No SDH-genotype-stratified efficacy data exist from any peposertib trial. (3) The synthetic lethality of DNA-PK inhibition with the SDH-specific BRCAness phenotype is mechanistically motivated but requires direct experimental validation in isogenic SDHA-null/SDHB-KO cell lines. Evidence_score 28 (theoretical): well-anchored mechanistic chain from SDH loss through BRCAness to NHEJ dependency, with supporting peposertib clinical data in related contexts, but no SDH-specific experimental or clinical data.

Pathway Connections
Succinate-Driven Homologous Recombination Deficiency

Succinate accumulation competitively inhibits the α-KG-dependent histone demethylases KDM4A and KDM4B (JMJD2A/B), which normally erase repressive H3K9me3 marks at sites of DNA double-strand breaks. When KDM4B is inhibited, H3K9me3 hypermethylation persists at break sites, blocking recruitment of TIP60 acetyltransferase and ATM kinase — both required for DNA end-resection and initiation of homology-directed repair (HDR/HR). The result is a 'BRCAness' phenotype: SDH-deficient tumor cells have impaired HR capacity despite wild-type BRCA1/2. Sulkowski et al. (Nat Genet 2018, PMID: 30013182) directly demonstrated HR deficiency and olaparib hypersensitivity in cells and tumors from SDH-deficient hereditary paraganglioma/PPGL patients; Sulkowski et al. (Nature 2020, PMID: 32494005) dissected the KDM4B/H3K9me3 chromatin mechanism.

Upstream event:

SDH loss → succinate accumulation → competitive inhibition of KDM4A/KDM4B (α-KG-dependent H3K9me3 demethylases) → H3K9me3 persistence at DNA double-strand break sites → impaired TIP60/ATM recruitment → defective DNA end-resection → HR deficiency

Downstream effects:

H3K9me3 hypermethylation at DNA double-strand break sitesImpaired TIP60 acetyltransferase and ATM kinase recruitmentDefective homologous recombination (BRCAness phenotype in BRCA1/2-wild-type cells)PARP inhibitor synthetic lethality (trapping unrepaired single-strand breaks in HR-deficient background)Selective sensitivity to olaparib and other PARP inhibitors in SDH-deficient versus SDH-intact cells
NHEJ / DNA-PK Backup Repair

In HR-deficient BRCAness-positive SDH-deficient cells, the non-homologous end-joining (NHEJ) pathway becomes the primary backup for DNA double-strand break (DSB) repair. DNA-PKcs (PRKDC), together with Ku70/Ku80, forms the DNA-PK holoenzyme at DSB ends — phosphorylating H2AX, activating ARTEMIS nuclease for end processing, and enabling XRCC4-DNA ligase IV ligation. Inhibiting DNA-PKcs in HR-deficient cells (BRCAness from SDH loss) removes this compensatory NHEJ backup, creating synthetic lethality. HR-proficient normal cells retain HR as an alternative DSB repair route and are substantially less affected.

Upstream event:

SDH loss → succinate → KDM4A/KDM4B inhibition → H3K9me3 persistence at DSBs → impaired TIP60/ATM → HR deficiency (BRCAness) → NHEJ becomes dominant/sole DSB repair pathway → dependency on DNA-PKcs for NHEJ execution

Downstream effects:

NHEJ is the primary DSB repair pathway in BRCAness-positive HR-deficient SDH-deficient cellsDNA-PKcs (PRKDC) is required for DSB end-synapsis, processing, and ligation via XRCC4-DNA ligase IVPeposertib (M3814) inhibits DNA-PKcs → blocks NHEJ → unrepaired DSBs accumulate in BRCAness-positive cellsHR-proficient normal cells tolerate DNA-PK inhibition via intact HR backup — providing a therapeutic windowCombination with PRRT (Lu-177 DOTATATE, alpha-particle RLT) in SDH-deficient PPGL: radiation-induced DSBs + HR impairment (BRCAness) + NHEJ inhibition (peposertib) = triple DSB repair failure
Molecular Targets

PRKDC

DNA-dependent protein kinase catalytic subunit (DNA-PKcs)

synthetic_lethal

Serine/threonine kinase and catalytic subunit of the DNA-PK holoenzyme (DNA-PKcs + Ku70/Ku80 heterodimer). DNA-PKcs is recruited to DNA double-strand break (DSB) ends by the Ku70/Ku80 ring, synapses the DSB ends to initiate the NHEJ repair complex, and phosphorylates multiple substrates including H2AX (γ-H2AX chromatin mark), ARTEMIS nuclease (activating it for 5'/3' overhang processing), and itself (autophosphorylation at Thr2609/Ser2056 regulates complex disassembly). DNA-PKcs coordinates XRCC4-DNA ligase IV-XLF ligation of processed DSB ends to complete NHEJ. In BRCAness-positive HR-deficient SDH-deficient tumors (where succinate-driven KDM4A/KDM4B inhibition constitutively impairs HR: Sulkowski et al. Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005), DNA-PKcs-mediated NHEJ becomes the primary DSB repair mechanism. Inhibiting DNA-PKcs with peposertib (M3814) therefore creates synthetic lethality with the BRCAness phenotype — distinct from POLQ inhibition (targets alt-EJ/TMEJ backup) and CHK1 inhibition (targets replication checkpoint, not repair pathway itself).

UniProt: P78527

Quick Facts

Tumor Type Applicability

All SDH tumors
Not FDA Approved
Clinical Trials
Evidence

Evidence from PubMed, OpenTargets, and ChEMBL will appear here once external data integration is enabled.

Coming in Phase 3

For research exploration only — not medical advice. Consult your doctor before acting on any information.

AI Analysis

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