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Elimusertib
AZD7648
DNA-PKcs inhibitor (DNA-dependent protein kinase catalytic subunit inhibitor)
Evidence Score
29
Elimusertib (AZD7648; AstraZeneca) is a potent, selective, orally bioavailable inhibitor of DNA-dependent protein kinase catalytic subunit (DNA-PKcs, encoded by PRKDC). DNA-PKcs is the enzymatic core of the DNA-PK holoenzyme, assembled at DSB termini by the Ku70/Ku80 heterodimer; it autophosphorylates at Ser2056/Thr2609 and phosphorylates downstream classical NHEJ effectors (XRCC4, LIG4, Artemis, PAXX) to execute DSB end-joining. Elimusertib blocks this catalytic activity, preventing c-NHEJ-mediated DSB repair. The mechanistic rationale in SDH-deficient tumors is a third-order synthetic lethality built on the BRCAness framework (Mechanisms 14, 18, 28). SDH loss → succinate accumulation → competitive inhibition of α-KG-dependent KDM4A and KDM4B histone demethylases at DSB sites → H3K9me3 persistence → impaired TIP60 acetyltransferase and ATM kinase recruitment → HR repair deficiency (BRCAness) in all SDH-deficient cells regardless of BRCA1/2 status (Sulkowski et al., Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005). In HR-deficient cells, c-NHEJ — mediated by the DNA-PK complex — becomes the primary remaining DSB repair pathway. Elimusertib inhibits DNA-PKcs and removes this backup, causing catastrophic unrepaired DSB accumulation selectively in BRCAness-positive cells. HR-proficient cells tolerate DNA-PKcs inhibition by routing DSBs through HR, creating the therapeutic window. Key preclinical evidence establishing BRCAness selectivity: Anastasia et al. (Mol Cancer Ther 2022, PMID 35149547) tested AZD7648 in BRCA-deficient versus BRCA-proficient ovarian cancer patient-derived xenograft (OC-PDX) models. AZD7648 significantly potentiated pegylated liposomal doxorubicin and olaparib in BRCA-deficient OC-PDX tumors — preventing abdominal metastases, reducing tumor burden, and improving survival — but produced no potentiation in BRCA-proficient OC-PDX controls. This directly validates the BRCAness-selective mechanism: DNA-PKcs inhibition is inert in HR-proficient cells but synthetic-lethal in HR-deficient (BRCAness-positive) cells. The same selectivity principle applies to BRCAness-positive SDH-deficient tumors. Contextual radiation sensitivity data: Berman et al. (Cancers 2026, PMID 42650014) reported 66.7% objective response rate and 100% disease control rate in 12 SDH-deficient GIST patients treated with Y-90 SIRT for hepatic metastases at 32-month median follow-up. The authors attributed this sensitivity to properties of SDH-deficient biology — consistent with BRCAness-driven impaired DSB repair rendering these tumors more vulnerable to radiation-induced DSBs. This observation directly contextualizes DNA-PKcs inhibition: if SDH-deficient cells are already radiation-sensitive (reflecting deficient DSB repair), further blocking c-NHEJ backup via elimusertib amplifies this vulnerability pharmacologically. Mechanistic distinctions from other DDR drugs in this engine: PARP inhibitors (olaparib/niraparib, Mechanism 14) trap PARP at SSBs → SSBs collapse into DSBs at replication forks → HR-deficient cells cannot resolve them; elimusertib prevents c-NHEJ from resolving the resulting DSBs — complementary mechanisms. ART558 (POLQ inhibitor, Mechanism 18) blocks TMEJ/alt-EJ, an error-prone microhomology-mediated backup mechanistically distinct from c-NHEJ. Prexasertib (CHK1 inhibitor, Mechanism 28) targets the replication fork stabilization checkpoint, not the DSB repair step itself. All four are non-redundant in BRCAness-positive cells. Clinical context: NCT03907969 was a Phase 1/2a open-label dose-escalation study of AZD7648 monotherapy or in combination with cytotoxic chemotherapy or novel anti-cancer agents in patients with advanced malignancies (n=30; AstraZeneca; status: COMPLETED). The AZD7648 + olaparib combination arm is the most directly relevant to the SDH-BRCAness context given Anastasia et al.'s preclinical data. Key limitation: No published data directly test elimusertib in SDH-deficient GIST, PPGL, or RCC cell lines or xenograft models. The mechanistic case rests on (1) the Sulkowski BRCAness mechanism (PMID 30013182, 32494005), (2) Anastasia et al.'s BRCA-deficient-selective AZD7648 preclinical data (PMID 35149547), and (3) Berman et al.'s SDH-GIST radiation sensitivity observation (PMID 42650014). Direct in vitro validation in isogenic SDH-null versus SDH-intact lines is the required next step.
Succinate accumulation competitively inhibits the α-KG-dependent histone demethylases KDM4A and KDM4B (JMJD2A/B), which normally erase repressive H3K9me3 marks at sites of DNA double-strand breaks. When KDM4B is inhibited, H3K9me3 hypermethylation persists at break sites, blocking recruitment of TIP60 acetyltransferase and ATM kinase — both required for DNA end-resection and initiation of homology-directed repair (HDR/HR). The result is a 'BRCAness' phenotype: SDH-deficient tumor cells have impaired HR capacity despite wild-type BRCA1/2. Sulkowski et al. (Nat Genet 2018, PMID: 30013182) directly demonstrated HR deficiency and olaparib hypersensitivity in cells and tumors from SDH-deficient hereditary paraganglioma/PPGL patients; Sulkowski et al. (Nature 2020, PMID: 32494005) dissected the KDM4B/H3K9me3 chromatin mechanism.
Upstream event:
SDH loss → succinate accumulation → competitive inhibition of KDM4A/KDM4B (α-KG-dependent H3K9me3 demethylases) → H3K9me3 persistence at DNA double-strand break sites → impaired TIP60/ATM recruitment → defective DNA end-resection → HR deficiency
Downstream effects:
In HR-deficient BRCAness-positive SDH-deficient cells, the non-homologous end-joining (NHEJ) pathway becomes the primary backup for DNA double-strand break (DSB) repair. DNA-PKcs (PRKDC), together with Ku70/Ku80, forms the DNA-PK holoenzyme at DSB ends — phosphorylating H2AX, activating ARTEMIS nuclease for end processing, and enabling XRCC4-DNA ligase IV ligation. Inhibiting DNA-PKcs in HR-deficient cells (BRCAness from SDH loss) removes this compensatory NHEJ backup, creating synthetic lethality. HR-proficient normal cells retain HR as an alternative DSB repair route and are substantially less affected.
Upstream event:
SDH loss → succinate → KDM4A/KDM4B inhibition → H3K9me3 persistence at DSBs → impaired TIP60/ATM → HR deficiency (BRCAness) → NHEJ becomes dominant/sole DSB repair pathway → dependency on DNA-PKcs for NHEJ execution
Downstream effects:
PRKDC
DNA-dependent protein kinase catalytic subunit (DNA-PKcs)
Serine/threonine kinase and catalytic subunit of the DNA-PK holoenzyme (DNA-PKcs + Ku70/Ku80 heterodimer). DNA-PKcs is recruited to DNA double-strand break (DSB) ends by the Ku70/Ku80 ring, synapses the DSB ends to initiate the NHEJ repair complex, and phosphorylates multiple substrates including H2AX (γ-H2AX chromatin mark), ARTEMIS nuclease (activating it for 5'/3' overhang processing), and itself (autophosphorylation at Thr2609/Ser2056 regulates complex disassembly). DNA-PKcs coordinates XRCC4-DNA ligase IV-XLF ligation of processed DSB ends to complete NHEJ. In BRCAness-positive HR-deficient SDH-deficient tumors (where succinate-driven KDM4A/KDM4B inhibition constitutively impairs HR: Sulkowski et al. Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005), DNA-PKcs-mediated NHEJ becomes the primary DSB repair mechanism. Inhibiting DNA-PKcs with peposertib (M3814) therefore creates synthetic lethality with the BRCAness phenotype — distinct from POLQ inhibition (targets alt-EJ/TMEJ backup) and CHK1 inhibition (targets replication checkpoint, not repair pathway itself).
UniProt: P78527
Tumor Type Applicability
Evidence from PubMed, OpenTargets, and ChEMBL will appear here once external data integration is enabled.
Coming in Phase 3
For research exploration only — not medical advice. Consult your doctor before acting on any information.
Have Claude analyze this drug's repurposing potential for SDH-deficient diseases.