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Elimusertib

AZD7648

DNA-PKcs inhibitor (DNA-dependent protein kinase catalytic subunit inhibitor)

Evidence Score

29

theoretical
Mechanism of Action

Elimusertib (AZD7648; AstraZeneca) is a potent, selective, orally bioavailable inhibitor of DNA-dependent protein kinase catalytic subunit (DNA-PKcs, encoded by PRKDC). DNA-PKcs is the enzymatic core of the DNA-PK holoenzyme, assembled at DSB termini by the Ku70/Ku80 heterodimer; it autophosphorylates at Ser2056/Thr2609 and phosphorylates downstream classical NHEJ effectors (XRCC4, LIG4, Artemis, PAXX) to execute DSB end-joining. Elimusertib blocks this catalytic activity, preventing c-NHEJ-mediated DSB repair. The mechanistic rationale in SDH-deficient tumors is a third-order synthetic lethality built on the BRCAness framework (Mechanisms 14, 18, 28). SDH loss → succinate accumulation → competitive inhibition of α-KG-dependent KDM4A and KDM4B histone demethylases at DSB sites → H3K9me3 persistence → impaired TIP60 acetyltransferase and ATM kinase recruitment → HR repair deficiency (BRCAness) in all SDH-deficient cells regardless of BRCA1/2 status (Sulkowski et al., Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005). In HR-deficient cells, c-NHEJ — mediated by the DNA-PK complex — becomes the primary remaining DSB repair pathway. Elimusertib inhibits DNA-PKcs and removes this backup, causing catastrophic unrepaired DSB accumulation selectively in BRCAness-positive cells. HR-proficient cells tolerate DNA-PKcs inhibition by routing DSBs through HR, creating the therapeutic window. Key preclinical evidence establishing BRCAness selectivity: Anastasia et al. (Mol Cancer Ther 2022, PMID 35149547) tested AZD7648 in BRCA-deficient versus BRCA-proficient ovarian cancer patient-derived xenograft (OC-PDX) models. AZD7648 significantly potentiated pegylated liposomal doxorubicin and olaparib in BRCA-deficient OC-PDX tumors — preventing abdominal metastases, reducing tumor burden, and improving survival — but produced no potentiation in BRCA-proficient OC-PDX controls. This directly validates the BRCAness-selective mechanism: DNA-PKcs inhibition is inert in HR-proficient cells but synthetic-lethal in HR-deficient (BRCAness-positive) cells. The same selectivity principle applies to BRCAness-positive SDH-deficient tumors. Contextual radiation sensitivity data: Berman et al. (Cancers 2026, PMID 42650014) reported 66.7% objective response rate and 100% disease control rate in 12 SDH-deficient GIST patients treated with Y-90 SIRT for hepatic metastases at 32-month median follow-up. The authors attributed this sensitivity to properties of SDH-deficient biology — consistent with BRCAness-driven impaired DSB repair rendering these tumors more vulnerable to radiation-induced DSBs. This observation directly contextualizes DNA-PKcs inhibition: if SDH-deficient cells are already radiation-sensitive (reflecting deficient DSB repair), further blocking c-NHEJ backup via elimusertib amplifies this vulnerability pharmacologically. Mechanistic distinctions from other DDR drugs in this engine: PARP inhibitors (olaparib/niraparib, Mechanism 14) trap PARP at SSBs → SSBs collapse into DSBs at replication forks → HR-deficient cells cannot resolve them; elimusertib prevents c-NHEJ from resolving the resulting DSBs — complementary mechanisms. ART558 (POLQ inhibitor, Mechanism 18) blocks TMEJ/alt-EJ, an error-prone microhomology-mediated backup mechanistically distinct from c-NHEJ. Prexasertib (CHK1 inhibitor, Mechanism 28) targets the replication fork stabilization checkpoint, not the DSB repair step itself. All four are non-redundant in BRCAness-positive cells. Clinical context: NCT03907969 was a Phase 1/2a open-label dose-escalation study of AZD7648 monotherapy or in combination with cytotoxic chemotherapy or novel anti-cancer agents in patients with advanced malignancies (n=30; AstraZeneca; status: COMPLETED). The AZD7648 + olaparib combination arm is the most directly relevant to the SDH-BRCAness context given Anastasia et al.'s preclinical data. Key limitation: No published data directly test elimusertib in SDH-deficient GIST, PPGL, or RCC cell lines or xenograft models. The mechanistic case rests on (1) the Sulkowski BRCAness mechanism (PMID 30013182, 32494005), (2) Anastasia et al.'s BRCA-deficient-selective AZD7648 preclinical data (PMID 35149547), and (3) Berman et al.'s SDH-GIST radiation sensitivity observation (PMID 42650014). Direct in vitro validation in isogenic SDH-null versus SDH-intact lines is the required next step.

Pathway Connections
Succinate-Driven Homologous Recombination Deficiency

Succinate accumulation competitively inhibits the α-KG-dependent histone demethylases KDM4A and KDM4B (JMJD2A/B), which normally erase repressive H3K9me3 marks at sites of DNA double-strand breaks. When KDM4B is inhibited, H3K9me3 hypermethylation persists at break sites, blocking recruitment of TIP60 acetyltransferase and ATM kinase — both required for DNA end-resection and initiation of homology-directed repair (HDR/HR). The result is a 'BRCAness' phenotype: SDH-deficient tumor cells have impaired HR capacity despite wild-type BRCA1/2. Sulkowski et al. (Nat Genet 2018, PMID: 30013182) directly demonstrated HR deficiency and olaparib hypersensitivity in cells and tumors from SDH-deficient hereditary paraganglioma/PPGL patients; Sulkowski et al. (Nature 2020, PMID: 32494005) dissected the KDM4B/H3K9me3 chromatin mechanism.

Upstream event:

SDH loss → succinate accumulation → competitive inhibition of KDM4A/KDM4B (α-KG-dependent H3K9me3 demethylases) → H3K9me3 persistence at DNA double-strand break sites → impaired TIP60/ATM recruitment → defective DNA end-resection → HR deficiency

Downstream effects:

H3K9me3 hypermethylation at DNA double-strand break sitesImpaired TIP60 acetyltransferase and ATM kinase recruitmentDefective homologous recombination (BRCAness phenotype in BRCA1/2-wild-type cells)PARP inhibitor synthetic lethality (trapping unrepaired single-strand breaks in HR-deficient background)Selective sensitivity to olaparib and other PARP inhibitors in SDH-deficient versus SDH-intact cells
NHEJ / DNA-PK Backup Repair

In HR-deficient BRCAness-positive SDH-deficient cells, the non-homologous end-joining (NHEJ) pathway becomes the primary backup for DNA double-strand break (DSB) repair. DNA-PKcs (PRKDC), together with Ku70/Ku80, forms the DNA-PK holoenzyme at DSB ends — phosphorylating H2AX, activating ARTEMIS nuclease for end processing, and enabling XRCC4-DNA ligase IV ligation. Inhibiting DNA-PKcs in HR-deficient cells (BRCAness from SDH loss) removes this compensatory NHEJ backup, creating synthetic lethality. HR-proficient normal cells retain HR as an alternative DSB repair route and are substantially less affected.

Upstream event:

SDH loss → succinate → KDM4A/KDM4B inhibition → H3K9me3 persistence at DSBs → impaired TIP60/ATM → HR deficiency (BRCAness) → NHEJ becomes dominant/sole DSB repair pathway → dependency on DNA-PKcs for NHEJ execution

Downstream effects:

NHEJ is the primary DSB repair pathway in BRCAness-positive HR-deficient SDH-deficient cellsDNA-PKcs (PRKDC) is required for DSB end-synapsis, processing, and ligation via XRCC4-DNA ligase IVPeposertib (M3814) inhibits DNA-PKcs → blocks NHEJ → unrepaired DSBs accumulate in BRCAness-positive cellsHR-proficient normal cells tolerate DNA-PK inhibition via intact HR backup — providing a therapeutic windowCombination with PRRT (Lu-177 DOTATATE, alpha-particle RLT) in SDH-deficient PPGL: radiation-induced DSBs + HR impairment (BRCAness) + NHEJ inhibition (peposertib) = triple DSB repair failure
Molecular Targets

PRKDC

DNA-dependent protein kinase catalytic subunit (DNA-PKcs)

synthetic_lethal

Serine/threonine kinase and catalytic subunit of the DNA-PK holoenzyme (DNA-PKcs + Ku70/Ku80 heterodimer). DNA-PKcs is recruited to DNA double-strand break (DSB) ends by the Ku70/Ku80 ring, synapses the DSB ends to initiate the NHEJ repair complex, and phosphorylates multiple substrates including H2AX (γ-H2AX chromatin mark), ARTEMIS nuclease (activating it for 5'/3' overhang processing), and itself (autophosphorylation at Thr2609/Ser2056 regulates complex disassembly). DNA-PKcs coordinates XRCC4-DNA ligase IV-XLF ligation of processed DSB ends to complete NHEJ. In BRCAness-positive HR-deficient SDH-deficient tumors (where succinate-driven KDM4A/KDM4B inhibition constitutively impairs HR: Sulkowski et al. Nat Genet 2018, PMID 30013182; Nature 2020, PMID 32494005), DNA-PKcs-mediated NHEJ becomes the primary DSB repair mechanism. Inhibiting DNA-PKcs with peposertib (M3814) therefore creates synthetic lethality with the BRCAness phenotype — distinct from POLQ inhibition (targets alt-EJ/TMEJ backup) and CHK1 inhibition (targets replication checkpoint, not repair pathway itself).

UniProt: P78527

Quick Facts

Tumor Type Applicability

All SDH tumors
Not FDA Approved
Clinical Trials
Evidence

Evidence from PubMed, OpenTargets, and ChEMBL will appear here once external data integration is enabled.

Coming in Phase 3

For research exploration only — not medical advice. Consult your doctor before acting on any information.

AI Analysis

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